If a chemical guy may interject into this interesting thread...
I read the Ariad opinion as yet another gotcha awaiting those of us who wish to protect complex inventions, esp. concerning inventions claimed functionally or in Markush practice. Most such inventions are probably biotech in nature, but not necessarily; anything with sufficiently broad applicability could run afoul of this largely <i>post hoc</i> "possession" interpretation of the written description requirement. But it does seem that the CAFC was mostly concerned with biotech, given the examples they provided.
A related issue is that, despite their protestations to the contrary, the court has largely made it very difficult to ensure a proper written description absent an actual reduction to practice. The court's opinion states that in order to satisfy written description for a generic claim,
the specification must demonstrate that the applicant has made a generic invention that achieves the claimed result and do so by showing that the applicant has invented species sufficient to support a claim to the functionally-defined genus.
How many species are needed, they don't say. The patent document in suit (as published, anyway -- haven't looked at PAIR) arguably supplies several varied species, based on discovered substances and molecules that had the desired effect in cell lines. These were even helpfully supplied in a table. But the majority did not seem to agree with that line of thought. I say "seem to", because whether they even believe that examples were provided is in question:
The ’516 patent discloses no working or even prophetic examples of methods that reduce NF-KB activity, and no completed syntheses of any of the molecules prophesized [sic] to be capable of reducing NF-KB activity ... the specification at best describes decoy molecule structures and hypothesizes with no accompanying description that they could be used to reduce NF-KB activity. Yet the asserted claims are far broader. (emphases mine)
It's a morass. If the specification describes molecular structures in a table, in the context of a discussion about how they could be used as decoys to reduce NF-KB activity, how is that not possession of the invention, at least in a narrow context? What further "accompanying description" would have redeemed it? If it is now insufficient, I don't see how anything less than synthesis, characterization, purification, and testing of every species will suffice, especially in an unpredictable art. And that would be a disaster for protecting such inventions.
If generic claims are too broad, enablement can deal with that, so long as we have a good case law of how many/kinds of species are needed to support the genus. But this business of striking down improvidently granted patents using an amorphous "written description" bogeyman is scary.